Encina-Montoya, F., Ramírez-Sánchez, E., Oberti-Grassau, C., Gallardo, C., Arias-Melgarejo, C., Esse, C., Mulsow, S., Mejías-Lagos, P., & Vega-Aguayo, R. (2025). Historical trend of ecological risk caused by copper sediment in Quintero Bay, Chile, associated with a copper smelter and refinery. Marine Pollution Bulletin.

Vera-Puerto, I., Moris, G., Valdés, H., Quiroz, M., Encina, F., Molle, P., Martín-Monerris, M., Hernández-Crespo, C., & Arias, C. A. (2025). Implementation of an experimental vertical flow treatment wetland for combined sewer overflow in the south of Chile. Journal of Water Process Engineering, 72, 107484.

García-Solís, F., Zúñiga, A. H., & Rau, J. R. (2025). Temporal interactions among carnivores in an anthropized landscape. Oecologica, 52(1). https://doi.org/10.2478/foecol-2025-0002

Encina-Montoya, F., Vega-Aguayo, R., Oberti-Grassau, C., Mardones-Lazcano, A., Muñoz, G., Barrios-Figueroa, R., Alvarado-Flores, C., Reyes-Campos, A., & Urbina-Foneron, M. A. (2024). First report of Patagonian toothfish (Dissostichus eleginoides) metabolic rate and its scaling on a surface culture system. Brazilian Journal of Biology, 84.

Alvarado-Flores, C., Barrios-Figueroa, R., Reyes-Campos, A., & Urbina-Foneron, M. A. (2024). Effects on enzyme activity and DNA integrity in rainbow trout (Oncorhynchus mykiss) exposed to fish farm effluents. Aquaculture Environment Interactions.

Vera-Puerto, I. L., Sarkar, S., Moris, G., Valdés, H., Quiroz, M., López, J., Encina, F., Molle, P., & Arias, C. A. (2024). First report of components responsible for odor sensation from a vertical flow constructed wetland treating combined sewer overflow. Environmental Science: Water Research & Technology, 10, 2013–2019.

Zúñiga, A. H., Subercaseaux, F. M., & Encina-Montoya, F. (2024). Diet of South American gray fox (Lycalopex griseus) in an agricultural landscape in Central Chile. IDESIA, 42(2), 59–65.

Ríos-Escalante, P., Baaloudj, A., Encina-Montoya, F., Vega, R., & Mardones, A. (2024). Null models to understand crustacean communities in inland waters in San Pedro de Atacama and Salar de Atacama basin, Antofagasta Region, Chile. IDESIA, 41(1).

Vega-Aguayo, R., Drake, C., Guzmán, V., Mardones, A., Valdebenito, I., De los Ríos-Escalante, P., Encina-Montoya, F., & Barile, J. (2023). Effect of protein and lipid levels in a growth diet on adult whitebait Galaxias maculatus (Jenyns 1842). Brazilian Journal of Biology, 83.

Zambrano Riquelme, M., Rodríguez-Luna, D., Alcalá, F. J., Rubilar, O., Alvear, M., Encina-Montoya, F., & Vidal, G. (2023). Composting as an alternative for the treatment of solid waste from the kraft pulp industry. Agronomy.

Zúñiga, A. H., Rau, J. R., Fierro, A., Vergara, P. M., Encina-Montoya, F., & Fuentes-Ramírez, A. (2022). Fire severity causes temporal changes in ground-dwelling arthropod assemblages of Patagonian Araucaria–Nothofagus forests. Fire.

Anabalón, L., Solano, J., Encina-Montoya, F., Bustos, M., Figueroa, A., & Gangitano, D. (2022). Cannabis seeds authentication by chloroplast and nuclear DNA analysis coupled with high-resolution melting method for quality control purposes. Cannabis and Cannabinoid Research.

Rodríguez-Luna, D., Vela, N., Alcalá, F. J., & Encina-Montoya, F. (2022). The environmental impact assessment of sanitation projects in Chile: Overview and improvement opportunities focused on follow-ups. International Journal of Environmental Research and Public Health.

Ryan, K. A., Chaverra Palacios, L., Encina, F., Graeber, D., Osorio, S., Stubbins, A., Woelfl, S., & Nimptsch, J. (2022). Assessing inputs of aquaculture-derived nutrients to streams using dissolved organic matter fluorescence. Science of the Total Environment.

Esse, C., Ríos, N., Saavedra, P., Fonseca, D., Encina-Montoya, F., Santander-Massa, R., De los Ríos-Escalante, P., Figueroa-Muñoz, G., López-Pérez, A., & Correa-Araneda, F. (2021). Effects of land use change on water availability and water efficiency in the temperate basins of south-central Chile. Journal of King Saud University – Science.

Cornejo, A., Encina-Montoya, F., Correa-Araneda, F., Rovira, D., García, G., Nieto, C., Villarreal, V., Jaramillo, N., Pérez, E., Valderrama, A., Pérez, J., & Boyero, L. (2021). High sensitivity of invertebrate detritivores from tropical streams to different pesticides. Ecotoxicology and Environmental Safety.

Zúñiga, A. H., Fuenzalida, V., Sandoval, R., & Encina-Montoya, F. (2021). Seasonal variation in the diet of two predators in an agroecosystem in southern–central Chile. Animal Biodiversity and Conservation, 44(1), 89–102.

Alvarado-Flores, C., Encina-Montoya, F., Tucca, F., Vega-Aguayo, R., Nimptsch, J., Oberti, C., Carmona, E., & Lüders, C. (2021). Assessing the ecological risk of active principles used currently by freshwater fish farms. Science of the Total Environment, 775, 144716.

Rodríguez-Luna, D., Vela, N., Alcalá, F. J., & Encina-Montoya, F. (2021). The environmental impact assessment in Chile: Overview, improvements, and comparisons. Environmental Impact Assessment Review.

Zúñiga, A. H., Rau, J. R., Jaksic, F. M., Vergara, P. M., Encina-Montoya, F., & Fuentes-Ramírez, A. (2021). Rodent assemblage composition as indicator of fire severity in a protected area of south-central Chile. Austral Ecology, 46, 249–260.

De los Ríos-Escalante, P., Vega, R., Encina, F., Barile, J., & Mardones, A. (2021). First report of inventory and role of macroinvertebrates and fish in Cautín river (38° S, Araucanía Region, Chile). Brazilian Journal of Biology, 80(1), 215–228.

Encina, F. (2021). Standard culture of Paratanytarsus grimmii Schneider, 1885 (Diptera: Chironomidae), for its use in toxicity bioassays. Brazilian Journal of Biology, 80(4), 735–740.

Mardones, A., Vega, R., Encina, F., De los Ríos, P., & Peña, B. (2021). Assessing the growth of arctic charr (Salvelinus alpinus) under four salinities in experimental conditions. Brazilian Journal of Biology, 80(4), 735–740.

Encina-Montoya, F., Boyero, L., Tonin, A. M., Aguayo, F., & others. (2020). Relationship between salt use in fish farms and drift of macroinvertebrates in a freshwater stream. Aquaculture Environment Interactions.

Correa-Araneda, F., Tonin, A. M., Pérez, J., Álvarez, K., Lopez-Rojo, N., Díaz, A., Esse, C., Encina-Montoya, F., Figueroa, R., & Boyero, L. (2020). Extreme climate events can slow down litter breakdown in streams. Aquatic Sciences, 82, 25.

2024–2026. Autor no indicado. (2024–2026). Multidimensional analysis of climate change–biomass interaction in riparian forests: Towards a better understanding of ecological integrity in watersheds (Proyecto Fondecyt, Coinvestigador).

2023–2027. Autor no indicado. (2023–2027). Estudio de antecedentes para generar instrumentos de gestión ambiental en la cuenca del Río Bueno (Normas Secundarias de Calidad Ambiental) (Aprobado mediante Res. Ex. 1010/2023, Ministerio del Medio Ambiente; Investigador responsable).

2021–2023. Autor no indicado. (2021–2023). Reactivación económica de la pesca por medio de la difusión tecnológica (Proyecto FIC, Código BIP 40033136-0; Coinvestigador).